A complete analysis and visualization package
The Chromium Software Suite is a complete package for analyzing and visualizing the Linked-Read sequencing data type produced by our unique 10x GemCode Technology. The Chromium Software Suite supports our comprehensive suite of workflow solutions, including Chromium Single Cell 3′, Genome, and Exome Solutions.Explore Demo
Comprehensive Analysis Pipelines
The Chromium Software Suite is a complete, turn-key analysis solution.
Building upon widely accepted aligners and variant callers, our Chromium Software Suite provides bioinformatics and analysis pipelines that specifically leverage the molecular barcoding of our 10x GemCode Technology to enable phasing and structural variant calling. Results are produced in standard file formats such as BAM, VCF and BEDPE, which can also be visualized in a new haplotype-aware genome browser called Loupe.
DNA Analysis Pipeline for the Chromium Genome and Exome Solutions
Single Cell RNA Analysis Pipeline for the Chromium Single Cell 3′ Solution
Long range NGS analysis
Best practices pipelines enhanced with phasing and structural variant calling for turn-key analysis.
Fully haplotype-aware genome browser for phased SNPs, indels, and structural rearrangements.
Open source informatics
Powerful, open developer tools for building high-throughput informatics pipelines.
The Chromium Software Suite includes:
Software for DNA Analysis as part of the Chromium Genome and Exome Solutions
A set of analysis pipelines that perform sample demultiplexing, barcode processing, alignment, quality control, variant calling, phasing, and structural variant calling.Learn more
Loupe Genome Browser
A haplotype-enabled genome browser and structural variant visualizer.Learn more
Software for Single Cell RNA Analysis as part of the Chromium Single Cell 3′ Solution
A set of analysis pipelines that combine robust transcriptome alignment with cellular barcoding and rapidly generate expression profiles across tens of thousands of cells at once.Learn more
Loupe Cell Browser
A browser that features an array of techniques for dimensionality reduction and clustering for single cell analysis.