Previous Versions Xenium Explorer - Official 10x Genomics Support

Previous Versions

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Align and explore an H&E image from the same section directly on the Xenium data.
Import a CSV file and view clustering results from community-developed tools.
Use the lasso tool to export Cell IDs for further analysis in community-developed tools.
Streamline files for Xenium Explorer visualization - Z-stack morphology.ome.tif image is now optional.

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Explore Xenium image-based in situ data with intuitive controls.
Organize markers of interest and visualize 3D localized transcripts at any scale.
Examine segmented cells colored by transcript density or clustering result.
Compare gene expression profiles and cell type proportions across tissue regions with a versatile lasso tool.
New: Save imported gene groups across sessions with Saved Views.
New: Compatible with all Xenium Onboard Analysis versions, but required for v1.3+.

Download is unavailable on mobile devices.

Initial release of Xenium Explorer!
Explore Xenium image-based in situ data with intuitive controls.
Organize markers of interest and visualize 3D localized transcripts at any scale.
Examine segmented cells colored by transcript density or clustering result.
Compare gene expression profiles and cell type proportions across tissue regions with a versatile lasso tool.