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Introduces the ability to color clonotypes based on metadata from the Cell Ranger aggr input CSV, allowing for more tailored visualizations

Loupe V(D)J Browser 5.2.0 highlights

Loupe V(D)J Browser

Chromium Single Cell Software Suite

Download Loupe V(D)J Browser

Loupe V(D)J Browser is a desktop application for Windows and macOS that allows the user to analyze, search, and visualize V(D)J sequences and clonotypes from 5' Chromium Single Cell Immune Profiling data.

Overview

Download Center

Getting Started

Tutorials

Release Notes

Loupe Browser

Datasets

Analysis Guides

Learn about Loupe V(D)J Browser and get oriented with its interface and features.

Interface and Features

Clonotype Distribution and Sequence

Summary Plots

Exploring Clonotypes

Isotype Switching in B Cells

Comparing Multiple Samples

Analysis of each of the sequenced libraries (5′ Gene Expression, V(D)J, Antibody Capture, and Antigen Capture), alone or in combination with other library types, can be performed using the latest versions of Cell Ranger, Loupe Browser, and Loupe V(D)J Browser.

Integrated Analysis

Integrated Analysis in Loupe Browser

Integrated V(D)J + 5’ Gene Expression Analysis in Loupe Browser

Integrated Analysis in Loupe V(D)J Browser

Integrated V(D)J + 5’ Gene Expression Analysis in Loupe V(D)J Browser

Integrated Analysis with Feature Barcoding

Integrated V(D)J + 5’ Gene Expression + Cell Surface Protein Analysis in Loupe V(D)J Browser

Other Analysis

Characterize Tumor Cells

What is Loupe V(D)J Browser?

View the latest updates to Loupe V(D)J Browser.

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