Everyday de novo Assembly

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The Chromium de novo Assembly Solution

True Diploid Assembly with the Supernova Assembler

Discover the true genome with the Supernova Assembler and open the door to low-cost, everyday
diploid assemblies. Unlock sample-specific sequences, probe diploid genome structure
and remove the need for a reference sequence of any kind.

Our Solution Features

  • True diploid assembly unlike other methods
  • Fast and simple de novo assembly workflow
  • Go from sample to assembly in <2 weeks
  • 10 Mb scaffold size and long range accuracy
  • High-quality assembly from as little as 1 ng of DNA
  • Validated and supported for human genomes*
View the Workflow
Genome Solution Suite


*Note on non-human samples: Supernova is a de novo assembly program that has been designed to assemble germline human genomes, from data generated using Chromium Genome Reagent Kits. 10x Genomics has validated Chromium Genome Reagent Kits and Supernova only on human genomes. Therefore, using Supernova to assemble non-human genomes is experimental and may have unexpected features that limit assembly quality. Despite this, many users have successfully assembled non-human genomes using Supernova.

Assembly Controller

The Chromium Controller

Compact, Sleek, Efficient.

The compact, sleek Chromium Controller has been designed to rapidly and efficiently automate the equivalent of 100,000s to 1,000,000s of pipetting steps for highly parallel sample partitioning and molecular barcoding. The Chromium Controller allows a user to run any Chromium Solution, spanning from genome to single cell analysis. A dedicated Chromium Single Cell Controller is also available for users who exclusively run Single Cell Solutions.

View Our Controller Gallery

Product List

Chromium de novo Assembly Solution

Reagents & Consumables

Reactions
Product Code
Chromium Genome Chip Kit v2
48 rxns
120257
Chromium Genome HT Library & Gel Bead Kit v2
96 rxns
120261
Chromium Genome Library Kit & Gel Bead Kit v2
16 rxns
120258
Chromium i7 Multiplex Kit
96 rxns
120262

Instruments

Warranty
Product Code
Chromium Controller & Accessory Kit
120223
120246

Software

The Supernova Assembler
Assembly Datasets
Scientific Seminars

Genome Assembly of the Mind-controlling Fly Pathogen E. Muscae Via 10x Genomics

 
  • Carolyn Elya
University of California, Berkeley
March 21, 2017
User Group Meeting - San Francisco, CA

de Novo Assembly of a Large Size Genome: the Olive Fruit Fly

 
  • Jiannis Ragoussis
McGill University
February 14, 2017
AGBT Annual Meeting - Hollywood, FL
Poster Hall

Assembly of individual chromosomes at megabase scale using 10x Linked-Reads

  • Genome Informatics
    Cold Spring Harbor Laboratory, New York
    November 1 - November 4, 2017

Direct determination of genome sequences

  • Wellcome Trust Genome Informatics Conference
    Cambridge, UK
    September 19 - 22, 2016
  • The Biology of Genomes
    Cold Spring Harbor, NY
    May 10 - 14, 2016

Order your Chromium Controller, today.

Request a Quote

Order your 10x system, today.