Reach Beyond the Standard Exome

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The Chromium Exome Sequencing Solution

Reach Beyond the Standard Exome

The Chromium Exome provides long range information, enabling phasing, structural variant detection
and copy number determination. Low complexity and repetitive regions previously missed
with short-read sequencing are now accessible.

Our Solution Features

  • High-quality libraries from only 1 ng of genomic DNA
  • Detect large scale structural variants (SVs) including gene fusions
  • Call and phase variants across the entire exome
  • Detect variants in genes inaccessible to standard short-read libraries
  • Useful for high sequence homology, including problematic duplications, inversions and pseudogenes
  • Optimized baits utilize Linked-Reads for intron-spanning
View the Workflow
Exome Solution Suite

Watch: How It Works

Long-Range Information from Short-Read Sequencing Data

See the workflow for whole exome and genome sequencing and how our technology partitions and barcodes DNA. Understand how the Linked-Reads enable long-range analysis and phasing of SNVs, indels, and structural variants.

The Chromium Controller

Compact, Sleek, Efficient.

The compact, sleek Chromium Controller has been designed to rapidly and efficiently automate the equivalent of 100,000s to 1,000,000s of pipetting steps for highly parallel sample partitioning and molecular barcoding. The Chromium Controller allows a user to run any Chromium Solution, spanning from genome to single cell analysis. A dedicated Chromium Single Cell Controller is also available for users who exclusively run Single Cell Solutions.

View Our Controller Gallery
Exome Controller

Product List

Chromium Exome Sequencing Solution

Reagents & Consumables

Product Code
Chromium Automation Accessory Kit
Chromium Genome Chip Kit v2
48 rxns
Chromium Genome HT Library & Gel Bead Kit v2 for Exome Application
96 rxns
Chromium Genome Library & Gel Bead Kit v2 for Exome Application
16 rxns
Chromium i7 Multiplex Kit
96 rxns
Chromium Post Capture Amplification Kit, included with 1000017 (1 qty), 1000018 (6 qty)


Product Code
Chromium Controller & Accessory Kit

Analysis Software

Long Ranger Analysis Pipelines
Loupe Genome Browser
Scientific Seminars

Population Scale Genome Study of the Faroese Population Using Linked-Reads

  • Noomi Oddmarsdóttir Gregersen
FarGen Project
November 01, 2017
Nature Webinar

Genome-wide Reconstruction of Complex Structural Variants

  • Noah Spies
Stanford University
March 21, 2017
User Group Meeting – San Francisco, CA

Addressing Difficult Biology: 10x and OneSeq Phased Exome

  • David Craig
Translational Genomics Research Institute
February 13, 2017
AGBT Annual Meeting – Hollywood, FL

Universal Approach for Noninvasive Prenatal Testing of Single Gene Diseases

  • Winnie Hui
The Chinese University of Hong Kong
February 13, 2017
AGBT Annual Meeting – Hollywood, FL

Deciphering Complex Structural Variation Using Linked-Reads

  • Jill Herschleb
10x Genomics, Inc.
January 14, 2017
Plant & Animal Genome – San Diego, CA

Linked-Reads for Improved Genomics

  • Sarah Garcia
10x Genomics, Inc.
November 11, 2016
AMP Annual Meeting – Charlotte, NC
Poster Hall

High throughput Linked-Read sequencing for improved small variant calling

  • ASHG 2017
    Orlando, FL
    October 17 – October 21, 2017

Moving into the darkness: Improving variant analysis with Linked-Reads

  • ASHG 2017
    Orlando, FL
    October 17 – October 21, 2017

Linked-Read sequencing for molecular cytogenetics

  • ASHG 2017
    Orlando, FL
    October 17 – October 21, 2017

Long range applications with short read sequencing

  • American Society of Human Genetics (ASHG) Annual Meeting
    Vancouver, BC
    October 18 – 22, 2016
  • Advances in Genome Biology and Technology (AGBT) Precision Health Meeting
    Scottsdale, AZ
    September 22 – 24, 2016

Order your Chromium Controller, today.

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Order your 10x system, today.