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LoupeR package

10x Genomics' LoupeR is an R package that works with Seurat objects to create a Loupe Browser file. The Loupe Browser file can then be imported into Loupe Browser (v7.0 or later) for data visualization and further exploration.

Learn more about LoupeR package
Available for download on the 10x GitHub page

"## Tutorials\n\nExplore the Loupe Browser tutorials for inspecting and investigating your Chromium Single Cell and Visium Spatial Gene Expression data.\n\n";

View all tutorialsDownload tutorial Loupe files
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System Requirements

Windows

  • Windows 10 (64-bit) or later
  • 16GB RAM
  • SSD storage highly recommended
  • Updated video/display drivers recommended
  • 100% scaling display setting recommended

macOS

  • macOS 10.15 (Catalina) or later
  • 16GB RAM
  • SSD storage highly recommended
  • Default display settings recommended

Performance Notes

  • When analyzing large single cell datasets (100k+ cells), 16GB RAM and a quad core processor are highly recommended for optimal performance.
  • Loupe Browser v6.0 and later is compatible with .cloupe files produced by Cell Ranger v1.3+ and can import .vloupe files (VDJ clonotypes) produced by Cell Ranger v2.0+

Installation

Windows

Loupe Browser for Windows is distributed as a self-installing .exe file. Double-click on the downloaded file to install.

macOS-installation

Follow the prompt to choose an installation folder. After installation, open Loupe Browser by double-clicking on the desktop icon, or double-clicking on a .cloupe file on your computer.

macOS

Loupe Browser for Mac is distributed as a .dmg file. Double-click to open the file. Then install Loupe by dragging the Loupe icon into the Applications folder. Open Loupe Browser by double-clicking on the app icon.

macOS-installation

Loupe Browser can then be opened within the Applications folder or by double-clicking the Loupe Browser icon on the desktop.