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10x Genomics support/Fixed RNA Profiling/Documentation/

Software

Cell Ranger

Cell Ranger is our set of analysis pipelines. Single Cell Fixed RNA Profiling data is analyzed with the same Cell Ranger software as for Single Cell Gene Expression products. The documentation for analyzing Fixed RNA Profiling gene expression libraries is currently available on the Single Cell Gene Expression support site, along with general Cell Ranger installation, tutorial, pipeline, output, and algorithm information.

Cell Ranger

Analyze single cell gene expression data with a set of free, easy-to-use analysis pipelines.

The following pages are specific to Fixed RNA Profiling:

What is Fixed RNA Profiling?

Fixed RNA Profiling with cellranger multi

Fixed RNA Profiling outputs overview

Fixed RNA Profiling algorithm overview

Cloud Analysis

10x Genomics Cloud Analysis is a platform for data management, analysis, and collaboration to streamline and accelerate the interpretation of data generated from 10x Genomics assays, including our Fixed RNA Profiling products. Cloud Analysis allows you to quickly and easily run our Cell Ranger analysis pipelines on the 10x Genomics Cloud using only your web browser. Currently available only in the United States & Canada.

Cloud Analysis

Analyze 10x Genomics data quickly and securely in the cloud.

Loupe Browser

Loupe Browser is our easy-to-use visualization software that lets you quickly and interactively find significant genes, cell types, and substructure within your single cell data. No programming required. Single Cell Fixed RNA Profiling data is visualized with the same Loupe Browser software as for Single Cell Gene Expression products. The documentation for visualizing Fixed RNA Profiling gene expression data is currently available on the Single Cell Gene Expression support site, along with general Loupe Browser download and installation instructions and tutorials.

Loupe Browser

Explore 10x Genomics data with our powerful visualization software.