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Supported Pipelines and Products

Supported Pipelines and Products

Cell annotations now available in Cloud Analysis!

Explore our new beta pipeline for generating cell annotations! This feature will be fully integrated into the next release of Cell Ranger.

Analysis PipelinesPipeline VersionLibrary Types
Space Ranger count

Visit the Space Ranger count documentation to learn more.
  • 3.0
  • Visium HD Spatial Gene Expression
Cell Ranger count

Visit the Cell Ranger count documentation to learn more.
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Single Cell 3’ Gene Expression
  • Single Cell 5’ Gene Expression
  • Feature Barcode Libraries
    • Antibody Capture
    • Custom Library
Cell Ranger multi

Visit the following pages to learn more about Cell Ranger multi with Multiplexing Capture data, Fixed RNA profiling data, and Immune Profiling data.
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Single Cell 3’ Gene Expression
  • Single Cell 5’ Gene Expression
  • Single Cell Fixed RNA Profiling
  • Feature Barcode Libraries
    • Antibody Capture
    • CRISPR Guide Capture
    • Custom Library
    • Fixed RNA Profiling Antibody Capture
  • Single Cell V(D)J
  • Multiplexing Capture (3' only)
Cell Ranger aggr

Visit the Cell Ranger aggr documentation to learn more.
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Single Cell 3’ Gene Expression
  • Single Cell 5’ Gene Expression
  • Single Cell Fixed RNA Profiling
  • Feature Barcode Libraries
    • Antibody Capture
    • CRISPR Guide Capture
    • Custom Library
    • Fixed RNA Profiling Antibody Capture
  • Single Cell V(D)J
  • Multiplexing Capture (3' only)
Cell Ranger vdj

Currently, the 10x Cloud Platform does not support Cell Ranger vdj in de novo mode.

Visit the Cell Ranger vdj documentation to learn more.
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Single Cell V(D)J
Cell Ranger reanalyze1

Visit the Cell Ranger reanalyze documentation to learn more.
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Single Cell 3' Gene Expression
  • Single Cell 5' Gene Expression
Cell Ranger annotate (Beta pipeline)

Visit the Cell Ranger annotate documentation to learn more.
  • 0.1
    (available in Cloud Analysis only)
  • Single Cell 3' Gene Expression
  • Single Cell 5' Gene Expression
  • Single Cell Fixed RNA Profiling
Cell Ranger ARC count

Visit the Cell Ranger ARC count documentation to learn more.
  • 2.0
  • Single Cell Multiome ATAC + Gene Expression
Cell Ranger ARC aggr

Visit the Cell Ranger ARC aggr documentation to learn more.
  • 2.0
  • Single Cell Multiome ATAC + Gene Expression
Cell Ranger ARC reanalyze1

Visit the Cell Ranger ARC reanalyze documentation to learn
  • 2.0
  • Single Cell Multiome ATAC + Gene Expression

At this time, reanalysis of aggregated analyses (Cell Ranger) is not available in Cloud Analysis.