Xenium Explorer
What is Xenium Explorer?
Explore Xenium In Situ data, from tissue macrostructures to subcellular resolution, with our interactive visualization tool. Pinpoint the locations of specific transcripts, check cell segmentation, and inform downstream analysis.
Tutorials
Xenium Explorer Inputs
List of Xenium Explorer-compatible input files.
Navigate Xenium Explorer
Learn about Xenium Explorer and orient yourself to its interface and features.
Image Layer
Learn how to interact with image data.
Cells Layer
Learn how to interact with cell data.
Transcripts Layer
Learn how to interact with transcript data.
Check Data Quality
Find tips for examining cell segmentation, cell cluster assignment, and gene expression with Xenium Explorer.
Export Regions of Interest
Use Xenium Explorer lasso tools to narrow your focus to the cells that matter.
Save and Share
Save UI settings, transfer configurations to another window, and share settings with others.
Image Alignment
Align post-Xenium images or import images aligned with third-party tools.
Converting Images
Convert post-Xenium images to a format compatible with Xenium Explorer.
Release Notes
View the latest updates to Xenium Explorer.
Xenium Onboard Analysis
Learn more about Xenium In Situ instrument analysis software.
Xenium Ranger
Reanalyze data from Xenium In Situ solutions.
Q&A
Browse Q&As from the 10x Genomics support team.
Datasets
Access free, publicly available data generated with Xenium In Situ Gene Expression solutions.
Analysis Guides
A collection of introductions, tutorials, and blogs for data analysis beyond 10x Genomics software.