Space Ranger

What is Space Ranger?

Space Ranger is a set of analysis pipelines that process 10x Genomics Visium data with brightfield or fluorescence microscope images, allowing users to map the whole transcriptome in a variety of tissues. Space Ranger v3.1 now supports Visium HD.

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Analysis

Inputs

Learn about input files required to run Space Ranger

Running Pipelines

Learn how to run Space Ranger

Outputs

Learn about the output files generated by Space Ranger

Tutorials

Set up Space Ranger

Install Space Ranger and perform a test run

Space Ranger for FF

Learn how to analyze fresh frozen (FF) samples with spaceranger count

Space Ranger for FFPE

Learn how to analyze formalin fixed paraffin embedded (FFPE) samples with spaceranger count

View all tutorials

Algorithms overview

Overview of algorithms

Advanced

Advanced pipeline content for Space Ranger

Release Notes

View the latest updates to Space Ranger

Q&A

Browse Q&As from the 10x Genomics support team

Datasets

Access free public Visium data from 10x Genomics

Analysis Guides

A collection of introductions, tutorials, and blogs for data analysis beyond software

Loupe Browser

Loupe Browser is a desktop application for interactive data visualization