Barcode Enabled Antigen Mapping (BEAM) is unsupported with GEM-X chemistry; therefore, Cell Ranger does not support BEAM/Antigen Capture libraries produced with this chemistry.
Starting with v8.0, support for Low Throughput (LT) libraries has been disabled in Cell Ranger. Please use v7.2 to analyze LT libraries.
Starting with v7.2, support for Targeted Gene Expression analysis has been disabled in Cell Ranger. Please use Cell Ranger v7.1 to analyze Targeted Gene Expression libraries.
What is Feature Barcode?
Adding extra layers of information to cells by running Single Cell Gene Expression in parallel with other assays
What is Cell Multiplexing
Processing multiple samples together in a single GEM well
What is Antigen Capture (BEAM)
A comprehensive approach to mapping antigens along with the gene expression and immune repertoire information from the same single cells
What is Fixed RNA Profiling?
Probe based whole transcriptome analysis for samples (single cells or nuclei) fixed with formaldehyde
What is HT?
High throughput, cost-effective solutions for profiling gene expression at the single cell level
Experimental Design for Immune Profiling
Recommendations for designing your V(D)J experiment