Cell Ranger
What is Cell Ranger?
A set of analysis pipelines that perform sample demultiplexing, barcode processing, single cell 3' and 5' gene counting, V(D)J transcript sequence assembly and annotation, and Feature Barcode analysis from single cell data.
Cell Ranger v8.0 introduces support for the analysis of GEM-X libraries.
Cell Ranger v7.2 is the last version to support the analysis of LT (low throughput) libraries.
Barcode Enabled Antigen Mapping (BEAM) is unsupported with GEM-X chemistry; therefore, Cell Ranger does not support BEAM/Antigen Capture libraries produced with this chemistry.
Algorithms overview
Overview of algorithms.
Advanced
Advanced pipeline content for Cell Ranger.
Release Notes
View the latest updates to Cell Ranger.
Q&A
Browse Q&As from the 10x Genomics support team.
Glossary
View terms and definitions relevant to Single Cell products.
Datasets
Access free public Chromium data from 10x Genomics.
Analysis Guides
A collection of introductions, tutorials, and blogs for data analysis beyond software.
Loupe Browser
Loupe Browser is a desktop application that allows you to interactively visualize data.