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Getting started with Visium HD data analysis and third-party tools
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Getting started with Visium HD data analysis and third-party tools

Visium HD is a spatial biology discovery tool that generates whole transcriptome data at single cell scale from FFPE, fresh frozen, and fixed frozen human and mouse tissues. It uses NGS-based spatial transcriptomics to map the molecular expression profiles of diverse cell types while preserving the complex spatial networks within tissue architecture. Software tools like Space Ranger and Loupe Browser, available for free with Visium HD, unlock the insights from this unique data modality which combines a histological image with high-resolution spatial RNA sequencing data. Easy integration with a growing ecosystem of R- and Python-based community developed tools that enable cell segmentation, cell type deconvolution, and spatial neighborhood analysis, among other capabilities, promises even greater discovery potential. 

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Olivia Habern
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