10x Visium Discovery Hub

Explore the power of spatial biology

Access 10x Genomics-generated Visium datasets of formalin-fixed, paraffin-embedded tumor samples and experience the power of spatially resolved biology for yourself. Click on an organ below to explore its atlas of data.

Select your organ of interest

Select an organ below to view the Spatial Gene Expression Dataset

10x Discovery Hub

Human Breast Cancer

5 µm section from Ductal Carcinoma In Situ, Invasive Carcinoma

Stained tissue
Stained image
Visium tissue
Visium image
Species
Human
Genes Detected
17651
Capture Area
6.5 x 6.5 mm
Spots Under Tissue
2518
Chemistry
Visium FFPE
Mean Reads per Spot
32524
Sequencing Depth
32524
Median Genes per Spot
5244
View and download dataset
10x Product

Spatial Gene Expression

Human Cervical Cancer

5 µm section from squamous cell carcinoma

Stained tissue
Stained image
Visium tissue
Visium image
Species
Human
Genes Detected
17871
Capture Area
6.5 x 6.5 mm
Spots Under Tissue
2781
Chemistry
Visium FFPE
Mean Reads per Spot
73046
Sequencing Depth
72087
Median Genes per Spot
7276
View and download dataset

Human Intestine Cancer

5 µm section from Human Intestinal Colorectal Cancer

Stained image
Stained image
Visium image
Visium image
Species
Human
Genes Detected
17579
Capture Area
6.5 x 6.5 mm
Spots Under Tissue
2660
Chemistry
Visium FFPE
Mean Reads per Spot
77288
Sequencing Depth
76794
Median Genes per Spot
7438
View and download dataset

Human Lung Cancer

5 µm section from Lung, Squamous Cell Carcinoma

Lung Squamous Cell Carcinoma stained
Stained image
Lung Squamous Cell Carcinoma Visium
Visium image
Species
Human
Genes Detected
18066
Capture Area
6.5 x 6.5 mm
Spots Under Tissue
3858
Chemistry
CytAssist for FFPE
Mean Reads per Spot
35785
Sequencing Depth
45753
Median Genes per Spot
6174
View and download dataset

Human Ovarian Cancer

5 µm section from serous papillary carcinoma of human ovarian

Stained image
Stained image
Visium image
Visium image
Species
Human
Genes Detected
17294
Capture Area
6.5 x 6.5 mm
Spots Under Tissue
3455
Chemistry
Visium FFPE
Mean Reads per Spot
63836
Sequencing Depth
63346
Median Genes per Spot
7621
View and download dataset

Human Prostate Cancer

5 µm section from Invasive Acinar Cell Carcinoma, Stage IV, Gleason score- 7

Stained image
Stained image
Visium image
Visium image
Species
Human
Genes Detected
16907
Capture Area
6.5 x 6.5 mm
Spots Under Tissue
4371
Chemistry
Visium FFPE
Mean Reads per Spot
23087
Sequencing Depth
23087
Median Genes per Spot
5391
View and download dataset

Human Melanoma

5 µm section from Skin, Malignant Melanoma

Stained image
Stained image
Visium image
Visium image
Species
Human
Genes Detected
18069
Capture Area
6.5 x 6.5 mm
Spots Under Tissue
3458
Chemistry
Visium CytAssist for FFPE
Mean Reads per Spot
55952
Sequencing Depth
55952
Median Genes per Spot
7598
View and download dataset

Spatial tools for cancer research

Tumor microenvironments (TMEs) are as diverse and complex as the most exotic rainforest and should be studied in context. By combining histology with spatially resolved gene expression insights, Visium data can enable a better understanding of the influence of tissue architecture on cancer progression, immune infiltration, and therapeutic response.

Explore featured resources to enhance your oncology research

  • Webinar

    Resolve tumor heterogeneity with 10x

    Spatial organization of the tumor microenvironment in renal cell cancer.
  • FFPE Application

    FFPE Application

    Learn how Visium for FFPE complemented pathological assessment of tumor microenvironments with spatial gene expression insights for key prostate cancer markers and cell types.
  • 10x Genomics Cancer Poster

    Poster

    Multiomic characterization of the tumor microenvironment in FFPE tissue by simultaneous protein and gene expression profiling.