5k MKN-45 Gastric Cancer Cell Line (150K Read Pairs Per Cell)
Single Cell CNV dataset analyzed using Cell Ranger DNA 1.1.0
Assess data quality
View summary metrics to assess data quality and more.
Visualize and explore data
Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.
Dataset overview
Output and supplemental files
Learn about Chromium analysis
Overview: MKN-45 gastric cancer cell line provided by https://academic.oup.com/nargab/article/2/2/lqaa016/5805307.
- Num Cells: 5218
- Total Sequencing Reads: 901 million
- Median estimated CNV resolution (in Mb): 5.51
- Sequencer: Novaseq
- Read Construct: 100 (R1), 8 (i7), 100 (R2)
- Any special pipeline parameters: --maxreads=783000000
Please contact [email protected] if you are interested in downloading the BAM (837 GB) or FASTQ (723 GB) files.
This dataset is licensed under the Creative Commons Attribution license.