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INSECT: Aphid

De Novo Assembly dataset analyzed using Supernova 2.0.0

Number of samples on this datasets page1

Aphid collected in Pleasanton, CA, USA. Salting out protocol used for DNA extraction.

  • Sequencer: NovaSeq
  • Input mass: 0.6 ng
  • Number of reads: 195 M
  • Genome size (estimated): 512 Mb
  • Raw coverage: 57.1 x
  • Inferred molecule length: 30 Kb
  • N50 Contig Length: 104.7 Kb
  • N50 Phase Block: 4.5 Mb
  • N50 Scaffold Length: 5 Mb
  • Analysis run with --maxreads=195000000

This dataset is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. 10x citation guidelines available here.

Product

De Novo Assembly

Software

Supernova

Subpipeline

supernova run

10x Instrument(s)

Chromium Controller

Species

Aphidoidea

Biomaterial Type

Specimen from Organism

Donor Count

1

Date Published

2018-01-16