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Interpreting Single Cell Gene Expression Data With and Without Intronic Reads

  • CG000554_Interpreting_SingleCellGEX_with_introns_RevA.pdf

    Technical Note, CG000554


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In whole transcriptome single cell data from Chromium Single Cell 3’ and 5’ products, reads primarily map to exonic regions derived from mature spliced mRNA transcripts. However, reads may also map entirely or partially to intronic regions (Figure 1). This Technical Note evaluates the effects of counting intronic reads for Single Cell Gene Expression cellular data.

Document Type
Technical Note

Last Modified
June 21, 2022