5k 1:1 Mixture of Fresh Frozen Human (GM12878) and Mouse (A20) Cells
Single Cell ATAC dataset analyzed using Cell Ranger ATAC 1.0.1
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Dataset overview
Output and supplemental files
Input files
Learn about Chromium analysis
1:1 mixture of human (GM12878) and mouse (A20) cells. This is a classic human-mouse mixture experiment to demonstrate single cell behavior.
- ~7550 transposed nuclei were loaded.
- 2941 human and 2243 mouse nuclei were recovered.
- Sequenced on Illumina NovaSeq with approximately 43k read pairs per cell:
- 50 bp Read 1
- 8 bp i7 index (sample index)
- 16 bp i5 index (10x Barcode)
- 49bp Read 2
This dataset is licensed under the Creative Commons Attribution license.