All datasets

Breast Tissue nuclei section A 2000 cells

Single Cell CNV dataset analyzed using Cell Ranger DNA 1.0.0

Number of samples on this datasets page1

Overview: Nuclei extracted from section A of a frozen breast tumor tissue from a triple negative ductal carcinoma with an estimated tumor purity of 75%

  • Num Cells: 2173
  • Total Sequencing Reads: 2.32B
  • Median Effective Reads per Mb: 218
  • Sequencer: Novaseq
  • Read Construct: 100 (R1), 8 (i7), 100 (R2)

This dataset is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. 10x citation guidelines available here.

Product

Single Cell CNV

Software

Cell Ranger DNA

Subpipeline

cellranger-dna cnv

10x Instrument(s)

Chromium Controller

Species

Human

Anatomical Entity

Breast

Preservation Method

Fresh Frozen

Disease State

triple negative ductal carcinoma, breast cancer

Cells or Nuclei

Nuclei

Biomaterial Type

Specimen from Organism

Cell/Nuclei Count

2,173

Donor Count

1

Date Published

2018-10-05