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5k MKN-45 Gastric Cancer Cell Line (100K Read Pairs Per Cell)

Single Cell CNV dataset analyzed using Cell Ranger DNA 1.1.0

Number of samples on this datasets page1

Overview: MKN-45 gastric cancer cell line provided by https://academic.oup.com/nargab/article/2/2/lqaa016/5805307.

  • Num Cells: 5219
  • Total Sequencing Reads: 600 million
  • Median estimated CNV resolution (in Mb): 7.89
  • Sequencer: Novaseq
  • Read Construct: 100 (R1), 8 (i7), 100 (R2)
  • Any special pipeline parameters: --maxreads=522000000

Please contact support@10xgenomics.com if you are interested in downloading the BAM (837 GB) or FASTQ (723 GB) files.

This dataset is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. 10x citation guidelines available here.

Product

Single Cell CNV

Software

Cell Ranger DNA

Subpipeline

cellranger-dna cnv

10x Instrument(s)

Chromium Controller

Species

Human

Anatomical Entity

Stomach

Disease State

Gastric Cancer

Cells or Nuclei

Cells

Biomaterial Type

Cell Line

Cell/Nuclei Count

5,219

Donor Count

1

Date Published

2019-09-23