10x Genomics Support/Cell Ranger/Miscellaneous/

10x Genomics Citations

To cite 10x Genomics datasets, User Guides, Demonstrated Protocols, Technical Notes, Application Notes, or 10x Genomics software, use the following formats:


PBMCs from C57BL/6 mice (v1, 150x150), Single Cell Immune Profiling Dataset by Cell Ranger v3.1.0, 10x Genomics, (2019, July 24).

User Guides/Demonstrated Protocols

Chromium Single Cell V(D)J Reagent Kits with Feature Barcoding technology for Cell Surface Protein, Document Number CG000186 Rev A, 10x Genomics, (2019, July 25).

Document and Revision Numbers (e.g., CG000186 Rev A) are located on the cover page in User Guides and Technical Notes. Other literature lists the part number in the copyright note at the bottom of the last page.

Technical Notes/Application Notes

Technical Note – Resolving Cell Types as a Function of Read Depth and Cell Number, Document Number CG000148, 10x Genomics, (2019, April 30).

10x Genomics software

Use the following format when citing 10x Genomics software:

  • 10x Genomics Software Name and Version x.y.z

For example:

  • 10x Genomics Cell Ranger v7.1.0
  • 10x Genomics Space Ranger v3.0.0
  • 10x Genomics Loupe Browser v8.0.0

Note: When citing software, be sure to specify the relevant software version number.

10x Genomics Cloud Analysis

To cite datasets generated in 10x Genomics Cloud Analysis, use the following format:

  • 10x Genomics Software Name and Version x.y.z using 10x Genomics Cloud Analysis

For example:

  • 10x Genomics Cell Ranger v5.0.1 using 10x Genomics Cloud Analysis
  • 10x Genomics Cell Ranger v4.0.0 using 10x Genomics Cloud Analysis

Citations for 10x Genomics publications

Cell Ranger

Zheng, G. X. Y. et al. (2017). Massively parallel digital transcriptional profiling of single cells. Nature Communications 8: 1-12, doi:10.1038/ncomms14049

Cell Ranger ATAC

Satpathy, A. T. et al. (2019). Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion. Nature Biotechnology 37: 925-936, doi:10.1038/s41587-019-0206-z

Xenium Onboard Analysis / Xenium Explorer

Janesick, A. et al. (2023). High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis. Nature Communications 14: 8353, doi:10.1038/s41467-023-43458-x


Weisenfeld, N. L. et al. (2017). Direct determination of diploid genome sequences. Genome Research 27: 757-767, doi:10.1101/gr.214874.116

Long Ranger

Marks, P. et al. (2019). Resolving the full spectrum of human genome variation using Linked-Reads. Genome Research 29: 635-645, doi:10.1101/gr.234443.118

No trademark ™ or registered trademark ® symbol is required when solely using the name of 10x Genomics or any of its products in a citation. However, for any other use of 10x Genomics’ trademarks, logos, graphics, figures, or other images, you must obtain prior written permission and follow all guidelines from 10x Genomics for such use, unless otherwise permitted by copyright and trademark law. To seek permission, please send a copy of your proposed use to [email protected].