1k Brain Cells from an E18 Mouse

Single Cell Gene Expression dataset analyzed using Cell Ranger 2.0.1

Assess data quality

View summary metrics to assess data quality and more.

Visualize and explore data

Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.

Dataset overview

Output and supplemental files

Input files

Learn about Chromium analysis

Cells from a combined cortex, hippocampus and sub ventricular zone of an E18 mouse.

931 cells detected
Sequenced on Illumina HiSeq2500 with approximately 56,000 reads per cell
26bp read1 (16bp Chromium barcode and 10bp UMI), 98bp read2 (transcript), and 8bp I7 sample barcode
Analysis run with —cells=2000

This dataset is licensed under the Creative Commons Attribution license.