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3k PBMCs from a Healthy Donor

Single Cell Gene Expression dataset analyzed using Cell Ranger 1.0.0

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Peripheral blood mononuclear cells (PBMCs) from a healthy donor (same donor as pbmc6k).

PBMCs are primary cells with relatively small amounts of RNA (~1pg RNA/cell).

  • 2,700 cells detected
  • Sequenced on Illumina NextSeq 500 with ~69,000 reads per cell
  • 98bp read1 (transcript), 8bp I5 sample barcode, 14bp I7 GemCode barcode and 10bp read2 (UMI)
  • Analysis run with --cells=3000

This dataset is licensed under the Creative Commons Attribution license.