8k Adult Mouse Cortex Cells, ATAC v1.1, Chromium X
Single Cell ATAC dataset analyzed using Cell Ranger ATAC 2.1.0
Visualize and explore data
Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.
Dataset overview
Output and supplemental files
Input files
Learn about Chromium analysis
Adult mouse cortex was obtained by 10x Genomics from BrainBits, LLC (PN C57ACX). Tissue was dissociated and nuclei were isolated using the demonstrated protocol Nuclei Isolation from Mouse Brain Tissue for Single Cell ATAC Sequencing (CG000212).
ATAC libraries were generated as described in the Chromium Single Cell ATAC Reagent Kits User Guide (v1.1 chemistry) (CG000209 Rev E) using the Chromium X and sequenced on Illumina NovaSeq 6000 to approximately 60k read pairs per cell. 7,749 cortex nuclei were recovered.
Paired-end, dual indexing:
- 50 cycles Read 1
- 8 cycles i7 (sample index)
- 16 cycles i5 (10x barcode)
- 49 cycles Read 2
This dataset is licensed under the Creative Commons Attribution license.