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Getting Started

Getting Started with Cell Ranger

Cell Ranger v7.2 (and later) does not support Targeted Gene Expression analysis. Use Cell Ranger v7.1 to analyze your Targeted Gene Expression libraries.
Future releases of Cell Ranger will not support Low Throughput (LT) libraries.
What is Cell Ranger?

A set of analysis pipelines that perform sample demultiplexing, barcode processing, single cell 3' and 5' gene counting, V(D)J transcript sequence assembly and annotation, and Feature Barcode analysis from single cell data.