10x Genomics Support/Cell Ranger/Getting Started/

Getting Started with Cell Ranger

Starting with v7.2, Cell Ranger no longer supports Targeted Gene Expression analysis. Please use Cell Ranger v7.1 to analyze Targeted Gene Expression libraries.
Starting with v8.0, support for Low Throughput (LT) libraries has been disabled in Cell Ranger. Please use v7.2 to analyze LT libraries.
What is Cell Ranger?

A set of analysis pipelines that perform sample demultiplexing, barcode processing, single cell 3' and 5' gene counting, V(D)J transcript sequence assembly and annotation, and Feature Barcode analysis from single cell data.