10x Genomics Support/Spatial Gene Expression for FFPE/Documentation/Probe Sets/

Visium Human Transcriptome Probe Set v1.0

Probe Set Contents

  • 19,144 gene_ids targeted by 19,902 probes.

    • 1,201 (6.3%) of these gene_ids (targeted by 1,272 probes) are excluded by default due to predicted off-target activity to a different gene. See the probe filter section of the Space Ranger algorithms overview for more details.
    • 17,943 gene_ids (targeted by 18,630 probes) are present in the final filtered output.

The gene_id information is included in the probe set reference CSV file.

Accompanying Probe Set Files

  • Visium Human Transcriptome Probe Set v1.0 - Probe Set Reference CSV file
  • Visium Human Transcriptome Probe Set v1.0 - BED file
  • Visium Human Transcriptome Probe Set v1.0 - Probe Off-target CSV file
  • Visium Human Transcriptome Probe Set v1.0 - Probe Set Metadata TSV file

These files are downloadable from the software downloads section.

For details on the file formats, see the probe set file descriptions.

Associated Part Numbers

  • Visium Human Transcriptome Probe Kit, Large PN-1000364
  • Visium Human Transcriptome Probe Kit, Small PN-1000363
Document Type
Specifications

Last Modified
March 20, 2024