Note: 10x Genomics does not provide support for community-developed tools and makes no guarantees regarding their function or performance. Please contact tool developers with any questions. If you have feedback about Analysis Guides, please email analysis-guides@10xgenomics.com.
Update: Cell Ranger versions 9.0+ have streamlined the analysis of multiplexed cells and samples using antibody hashtags (also known as cell or sample hashing). You no longer need to use the workarounds documented in this article. We recommend using Cell Ranger 9.0+ to analyze your cell-hashed data. Please see here for more guidance on how to run the pipeline.
Stay connected with latest technical workflow and software updatesSubscribe to newsletter