1k Human PBMCs Stained with a Panel of TotalSeq™-B Antibodies, Single Indexed

Single Cell Gene Expression dataset analyzed using Cell Ranger 4.0.0

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Dataset overview

Output and supplemental files

Input files

Learn about Chromium analysis

Peripheral blood mononuclear cells (PBMCs) from a healthy donor were obtained by 10x Genomics from AllCells and were labelled with a panel of 17 TotalSeq™-B antibodies (BioLegend). The same cells were used to generate Chromium Single Cell 3’ (Dual Index) data.

Libraries were prepared following the Chromium Single Cell 3' Reagent Kits v3.1 User Guide with Feature Barcode technology for Cell Surface Protein (CG000206) and sequenced on Illumina NovaSeq 6000.

Single Cell 3’ Cell Surface Protein v3.1 Single Index Library

Sequencing Depth: 54,962 read pairs per cell
Paired-end, single indexing Read 1: 28 cycles (16 bp barcode, 12 bp UMI) i7 index: 8 cycles (sample index) Read 2: 91 cycles (transcript)
Analysis Parameters Used: Run with --expect-cells=1,000

Key metrics were:

Cell detected: 1,206
Median UMI counts per cell: 6,233
Median genes per cell: 1,836

This dataset is licensed under the Creative Commons Attribution license.