5k MKN-45 Gastric Cancer Cell Line (500K Read Pairs Per Cell)
Single Cell CNV dataset analyzed using Cell Ranger DNA 1.1.0
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Dataset overview
Output and supplemental files
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Overview: MKN-45 gastric cancer cell line provided by https://academic.oup.com/nargab/article/2/2/lqaa016/5805307.
- Num Cells: 5219
- Total Sequencing Reads: 3.0 billion
- Median estimated CNV resolution (in Mb): 2.20
- Sequencer: Novaseq
- Read Construct: 100 (R1), 8 (i7), 100 (R2)
- Any special pipeline parameters: --maxreads=2610000000
Please contact support@10xgenomics.com if you are interested in downloading the BAM (837 GB) or FASTQ (723 GB) files.
This dataset is licensed under the Creative Commons Attribution license.