All datasets

500 Peripheral blood mononuclear cells (PBMCs) from a healthy donor (v1.0)

Single Cell ATAC dataset analyzed using Cell Ranger ATAC 1.1.0

Assess data quality
View summary metrics to assess data quality and more.
View summary
Visualize and explore data
Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.

Learn about Chromium analysis

Peripheral blood mononuclear cells (PBMCs) from a healthy donor.

Libraries were prepared following the Chromium Single Cell ATAC Reagent Kits (User Guide CG000168 Rev B). All PBMC libraries (v1.1 chemistry vs. v1 chemistry at all cell loads) were prepared with the same nuclei preparation.

  • ~750 transposed nuclei were loaded. ~500 expected nuclei recovered. 511 nuclei were detected.
  • Sequenced on Illumina NovaSeq with approximately 44k read pairs per cell.
  • 50bp read1, 8bp i7 (sample index), 16bp i5 (10x Barcode), 49bp read2.

This dataset is licensed under the Creative Commons Attribution license.