
Fresh cortex from adult mouse brain (P50). \~7,700 transposed nuclei were loaded and 3,880 nuclei were recovered.

Samples were sequenced on Illumina NovaSeq with approximately 44k read pairs per cell:

- 50 bp Read 1
- 8 bp i7 index (sample index)
- 16 bp i5 index (10x Barcode)
- 49 bp Read 2


FASTQs

Clustering analysis

Peak by cell matrix (filtered)

Peak by cell matrix HDF5 (filtered)

Transcription Factor by cell matrix (filtered)

Transcription Factor by cell matrix HDF5 (filtered)

Fragments (TSV)

Fragments index (TBI)

Peak annotation (CSV)

Peak-motif associations (BED)

Peaks (BED)

Position-sorted alignments (BAM)

Position-sorted alignments index (BAI)

Peak by cell matrix (raw)

Peak by cell matrix HDF5 (raw)

Per Barcode metrics (CSV)

Summary Metrics CSV

Summary Metrics JSON

Summary HTML

Loupe Browser file

Summary

Files

Chromium Controller

Single Cell ATAC

Cell Ranger ATAC

Fresh Cortex from Adult Mouse Brain (P50)