All datasets

PBMCs from Citrate-Treated Cell Preparation Tubes (3' v3.1 Chemistry)

Single Cell Gene Expression dataset analyzed using Cell Ranger 6.1.0

Assess data quality
View summary metrics to assess data quality and more.
View summary
Visualize and explore data
Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.

Learn about Chromium analysis

Donor Information: Healthy female.

Isolation protocol: CG000392.RevA: Isolation of Leukocytes, Bone Marrow and Peripheral Blood Mononuclear Cells for Single Cell RNA Sequencing.

Whole transcriptome/Gene Expression libraries were generated as described in the Chromium Next GEM Single Cell 3' Reagent Kits v3.1 (Dual Index) User Guide (CG000204 Rev D).

Sequencing data were processed using Cell Ranger, with websummary and output files available below.

  • Sequencing instrument: Illumina NovaSeq 6000
  • Sequencing depth: 32,708
  • Sequencing configuration: Paired-end (28 X 90), single-indexed. Read 1: 28 cycles (16 bp barcode, 10 bp UMI); i7 index: 10 cycles; i5 index: 10 cycles; Read 2: 90 cycles (transcript)
  • Cells detected: 3,938
  • Median genes per cell: 1,566
  • Median UMIs per cell: 5,249

This dataset is licensed under the Creative Commons Attribution license.