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Visium Mouse Transcriptome Probe Set v2.0

Visium Mouse Transcriptome Probe Set v2.0

Visium probe sets are bundled with the Space Ranger software. Both Space Ranger and individual probe sets can be downloaded here.

Probe Set Contents

  • 19,405 gene_ids targeted by 55,538 probes.

    • 346 (1.8%) of these genes (targeted by 351 probes) are excluded by default due to predicted off-target activity to a different gene. See the probe filter section of the Space Ranger algorithms overview for more details.
    • 19,059 genes (targeted by 55,187 probes) are present in the final filtered output.
    • Some reagent lots may include a small number of probes whose ID includes the prefix DEPRECATED and are always excluded from analysis. Please contact [email protected] with any questions.

The gene_id information is included in the probe set reference CSV file.

Accompanying Probe Set Files

  • Visium Mouse Transcriptome Probe Set v2.0 - Probe Set Reference CSV file
  • Visium Mouse Transcriptome Probe Set v2.0 - BED file
  • Visium Mouse Transcriptome Probe Set v2.0 - Probe Off-target CSV file
  • Visium Mouse Transcriptome Probe Set v2.0 - Probe Set Metadata TSV file

These files are downloadable from the software downloads section.

For details on the file formats, see the probe set file descriptions.

Associated Part Numbers

  • Visium Mouse Transcriptome Probe Kit v2.0, Small PN-1000667
Document Type
Specifications

Last Modified
June 10, 2024