All datasets

1k Nuclei from BJ Fibroblast Euploid Cell Line

Single Cell CNV dataset analyzed using Cell Ranger DNA 1.0.0

Number of samples on this datasets page1

Overview: Nuclei from BJ Fibroblast Euploid Cell Line acquired from ATCC (ATCC® CRL-2522™) Nuclei were extracted from a BJ cell line cultured at 10X, passaged 3 times and grown to confluence to synchronize cell into a G1 maintaining state

  • Num Cells: 1099
  • Total Sequencing Reads: 2.3 billion
  • Median Effective Reads per Mb: 434
  • Sequencer: Novaseq
  • Read Construct: 100 (R1), 8 (i7), 100 (R2)
  • Any special pipeline parameters: No

This dataset is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. 10x citation guidelines available here.

Product

Single Cell CNV

Software

Cell Ranger DNA

Subpipeline

cellranger-dna cnv

10x Instrument(s)

Chromium Controller

Species

Human

Anatomical Entity

Skin

Cells or Nuclei

Nuclei

Selected Cell Types

fibroblast

Biomaterial Type

Cell Line

Cell/Nuclei Count

1,099

Donor Count

1

Date Published

2018-06-29