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2k Brain Cells from an E18 Mouse

Single Cell Gene Expression dataset analyzed using Cell Ranger 2.1.0

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Cells from a combined cortex, hippocampus and sub ventricular zone of an E18 mouse.

  • 2,022 cells detected
  • Approximately 72,000 reads per cell
  • Sequenced on Illumina HiSeq4000 with approximately 71,000 reads per cell
  • 26bp read1 (16bp Chromium barcode and 10bp UMI), 98bp read2 (transcript), and 8bp I7 sample barcode
  • Analysis run with --expect-cells=2000
  • Analysis run with reference version 1.2.0

This dataset is licensed under the Creative Commons Attribution license.