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New to Xenium Explorer? Getting Started with Xenium Explorer

Walk through Xenium Explorer features for investigating your in situ gene expression data.

Xenium Explorer Inputs

List of input files compatible with Xenium Explorer.

Navigate Xenium Explorer

Learn about Xenium Explorer and get oriented to Xenium Explorer interface and features.

Check Data Quality

Find tips for examining cell segmentation, cell cluster assignment, and gene expression with Xenium Explorer.

Export Regions of Interest

Use Xenium Explorer lasso tools to narrow your focus to the cells that matter.

Save and Share

Save UI settings, transfer configurations to another window, and share settings with others.

Image Alignment

Align post-Xenium images or import images aligned with third-party tools.

Converting Images

Convert post-Xenium images to a format compatible with Xenium Explorer.