Support homeXenium Explorer


New to Xenium Explorer? Getting Started with Xenium Explorer

Walk through Xenium Explorer features for investigating your in situ gene expression data.

Xenium Explorer Inputs

List of Xenium Explorer-compatible input files.

Navigate Xenium Explorer

Learn about Xenium Explorer and orient yourself to its interface and features.

Image Layer

Learn how to interact with image data.

Cells Layer

Learn how to interact with cell data.

Transcripts Layer

Learn how to interact with transcript data.

Check Data Quality

Find tips for examining cell segmentation, cell cluster assignment, and gene expression with Xenium Explorer.

Export Regions of Interest

Use Xenium Explorer lasso tools to narrow your focus to the cells that matter.

Save and Share

Save UI settings, transfer configurations to another window, and share settings with others.

Image Alignment

Align post-Xenium images or import images aligned with third-party tools.

Converting Images

Convert post-Xenium images to a format compatible with Xenium Explorer.