10x Genomics Support/Spatial Gene Expression for FFPE/Documentation/Probe Sets/

Visium Mouse Transcriptome Probe Set v1.0

Probe Set Contents

  • 20,551 gene_ids targeted by 20,873 probes.

    • 1,086 (5.3%) of these gene_ids (targeted by 1,110 probes) are excluded by default due to predicted off-target activity to a different gene. See the probe filter section of the Space Ranger algorithms overview for more details.
    • 19,465 gene_ids (targeted by 19,763 probes) are present in the final filtered output.
    • Some reagent lots may include a small number of probes whose ID includes the prefix DEPRECATED and are always excluded from analysis. Please contact [email protected] with any questions.

The gene_id information is included in the probe set reference CSV file.

Accompanying Probe Set Files

  • Visium Mouse Transcriptome Probe Set v1.0 - Probe Set Reference CSV file
  • Visium Mouse Transcriptome Probe Set v1.0 - BED file
  • Visium Mouse Transcriptome Probe Set v1.0 - Probe Off-target CSV file
  • Visium Mouse Transcriptome Probe Set v1.0 - Probe Set Metadata TSV file

These files are downloadable from the software downloads section.

For details on the file formats, see the probe set file descriptions.

Associated Part Numbers

  • Visium Mouse Transcriptome Probe Kit, Large PN-1000366
  • Visium Mouse Transcriptome Probe Kit, Small PN-1000365
Document Type
Specifications

Last Modified
March 20, 2024