10x Library

Datasets

Single Cell Gene Expression Datasets

Chromium Demonstration (v2 Chemistry)

Cell Ranger 2.1.0

100 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

6k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

12k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

4k PBMCs from a Healthy Donor

8k PBMCs from a Healthy Donor

9k Brain Cells from an E18 Mouse

1k Brain Cells from an E18 Mouse

1k Brain Nuclei from an E18 Mouse

2k Brain Nuclei from an Adult Mouse (>8 weeks)

2k Brain Cells from an E18 Mouse

2k Fixed Brain Cells from an E18 Mouse

2k Fixed (for 6 days at -80ºC) Brain Cells from an E18 Mouse

3k Pan T Cells from a Healthy Donor

4k Pan T Cells from a Healthy Donor

Aggregate of t_3k and t_4k

Cell Ranger 2.0.1

100 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

1k Brain Cells from an E18 Mouse

2k Brain Nuclei from an Adult Mouse (>8 weeks)

1k Brain Nuclei from an E18 Mouse

1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

6k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

12k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

4k PBMCs from a Healthy Donor

8k PBMCs from a Healthy Donor

9k Brain Cells from an E18 Mouse

3k Pan T Cells from a Healthy Donor

4k Pan T Cells from a Healthy Donor

Aggregate of t_3k and t_4k

Cell Ranger 1.3.0

100 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

6k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

12k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

4k PBMCs from a Healthy Donor

8k PBMCs from a Healthy Donor

9k Brain Cells from an E18 Mouse

3k Pan T Cells from a Healthy Donor

4k Pan T Cells from a Healthy Donor

Aggregate of t_3k and t_4k

Cell Ranger 1.2.0

100 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

1k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

6k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

12k 1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

4k PBMCs from a Healthy Donor

8k PBMCs from a Healthy Donor

9k Brain Cells from an E18 Mouse

3k Pan T Cells from a Healthy Donor

4k Pan T Cells from a Healthy Donor

Aggregate of t_3k and t_4k

Chromium Megacell Demonstration (v2 Chemistry)

Cell Ranger 1.3.0

1.3 Million Brain Cells from E18 Mice

Cell Ranger 1.2.0

1.3 Million Brain Cells from E18 Mice

Chromium Demonstration (v1 Chemistry)

Cell Ranger 1.1.0

33k PBMCs from a Healthy Donor

3k PBMCs from a Healthy Donor

6k PBMCs from a Healthy Donor

1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

Cell Ranger 1.0.0

1:1 Mixture of Fresh Frozen Human (HEK293T) and Mouse (NIH3T3) Cells

3k PBMCs from a Healthy Donor

Single Cell 3′ Paper: Zheng et al. 2017

Cell Ranger 1.1.0

AML027 Pre-transplant BMMCs

Frozen PBMCs (Donor B)

ERCC (1k GEMS, 1:10 Dilution)

CD56+ Natural Killer Cells

Frozen BMMCs (Healthy Control 2)

CD34+ Cells

50%:50% Jurkat:293T Cell Mixture

CD14+ Monocytes

AML035 Post-transplant BMMCs

CD4+/CD25+ Regulatory T Cells

CD19+ B Cells

90%:10% Donor B: Donor C PBMC Mixture

Frozen BMMCs (Healthy Control 1)

Jurkat Cells

Frozen PBMCs (Donor C)

293T and 3T3 Cell Mixture

CD4+/CD45RA+/CD25- Naive T cells

99%:1% Jurkat:293T Cell Mixture

293T Cells

Frozen PBMCs (Donor A)

Fresh 68k PBMCs (Donor A)

CD4+/CD45RO+ Memory T Cells

99%:1% Donor B: Donor C PBMC Mixture

AML027 Post-transplant BMMCs

AML035 Pre-transplant BMMCs

CD8+ Cytotoxic T cells

CD4+ Helper T Cells

50%:50% Donor B: Donor C PBMC Mixture

CD8+/CD45RA+ Naive Cytotoxic T Cells

Single Cell Immune Profiling Datasets

V(D)J + 5′ Gene Expression

Cell Ranger 2.1.0

NSCLC tumor – 5’ gene expression

NSCLC tumor – Ig enrichment from amplified cDNA

NSCLC tumor – TCR enrichment from amplified cDNA

PBMCs of a healthy donor – 5′ gene expression

PBMCs of a healthy donor – Ig enrichment from amplified cDNA

PBMCs of a healthy donor – TCR enrichment from amplified cDNA

Direct TCR enrichment

Cell Ranger 2.1.0

Pan T Cells isolated from mononuclear cells of a healthy donor

CD8+ Cytotoxic T cells from mononuclear cells of a healthy donor

CD4+ helper T cells from mononuclear cells of a healthy donor

Peripheral blood mononuclear cells (PBMCs) from a healthy donor

Jurkat, a lymphoblast cell line cultured in suspension

Anti EBV specific T cells of a healthy donor

Dissociated primary tumor cells from a clear cell renal carcinoma (CCRC)

Enriched CD3+ T cells of dissociated primary cells from a clear cell renal carcinoma (CCRC)

Direct Ig enrichment

Cell Ranger 2.1.0

CD19+ B cells isolated from PBMCs of a healthy donor – Direct Ig enrichment

GM12878 cell line – Direct Ig enrichment

Single Cell V(D)J Demonstration

Cell Ranger 2.0.1

Pan T Cells isolated from mononuclear cells of a healthy donor

CD8+ Cytotoxic T cells from mononuclear cells of a healthy donor

CD4+ helper T cells from mononuclear cells of a healthy donor

Peripheral blood mononuclear cells (PBMCs) from a healthy donor

Jurkat, a lymphoblast cell line cultured in suspension

Anti EBV specific T cells of a healthy donor

Dissociated primary tumor cells from a clear cell renal carcinoma (CCRC)

Enriched CD3+ T cells of dissociated primary cells from a clear cell renal carcinoma (CCRC)

Cell Ranger 2.0.0

Pan T Cells isolated from mononuclear cells of a healthy donor

CD8+ Cytotoxic T cells from mononuclear cells of a healthy donor

CD4+ helper T cells from mononuclear cells of a healthy donor

Peripheral blood mononuclear cells (PBMCs) from a healthy donor

Jurkat, a lymphoblast cell line cultured in suspension

Anti EBV specific T cells of a healthy donor

Genome Sequencing Datasets

Chromium Genome

Long Ranger 2.2.1

NA19240 Germline Genome v2

NA12878 Germline Genome v2

Long Ranger 2.1.4

NA12878 Germline Genome v2

Long Ranger 2.1.0

NA12878 Germline Whole Genome

HCC1954 Tumor Whole Genome

HCC1954 Normal Whole Genome

Long Ranger 2.0.0

HCC1954 Tumor Whole Genome

HCC1954 Normal Whole Genome

NA12878 Germline Whole Genome

Exome Sequencing Datasets

Long Ranger 2.2.1

NA12878 Germline Exome v2

Long Ranger 2.1.4

NA12878 Germline Exome v2

Long Ranger 2.1.0

HCC1954 Tumor Whole Exome

NA12878 Germline Whole Exome

HCC1954 Normal Whole Exome

Long Ranger 2.0.0

NA12878 Germline Whole Exome

HCC1954 Tumor Whole Exome

HCC1954 Normal Whole Exome

de novo Assembly Datasets

Supernova 2.0 Sample Datasets – Jan 2018

Supernova 2.0.0

HUMAN: Anonymous HGP donor, male

HUMAN: Equimolar mix of CHM1/CHM13

HUMAN: NA12878 Germline, Caucasian ancestry, female individual

HUMAN: HG00512, Chinese ancestry, male individual

HUMAN: NA19240, Yoruba ancestry, female individual

HUMAN: NA19238, Yoruba ancestry, female individual

HUMAN: NA24385, Ashkenazi ancestry, male individual

HUMAN: HG00733, Puerto Rican ancestry, female individual

VERTEBRATE: Anna’s hummingbird

VERTEBRATE: Zebrafish Sanger AB Tübingen line

VERTEBRATE: An outbred dog called Ruby

PLANT: Maize B73

INSECT: Fruit fly, F1 cross iso-1 x Canton-S

INSECT: One moth collected in a garden

INSECT: Second moth collected in a garage

INSECT: Caterpillar

INSECT: Aphid

Supernova Manuscript 2016

Supernova 1.1.0

HG00733

NA19238

NA24385

HGP

HG00512

NA12878

NA19240

Supernova 1.0.0

NA12878 Germline

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