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Getting Started

Getting Started with Cell Ranger

Barcode Enabled Antigen Mapping (BEAM) is unsupported with GEM-X chemistry; therefore, Cell Ranger does not support BEAM/Antigen Capture libraries produced with this chemistry.
Starting with v8.0, support for Low Throughput (LT) libraries has been disabled in Cell Ranger. Please use v7.2 to analyze LT libraries.
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    What is Cell Ranger?Supported librariesWhat is Feature Barcode?What is Fixed RNA Profiling?What is Cell Multiplexing?What is Antigen Capture (BEAM)?What is HT (High Throughput)?Experimental design for Immune Profiling
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    Set up

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    Pipelines and inputs

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    Review outputs

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    Other resources