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1k Heart Cells from an E18 mouse (v2 chemistry)

Universal 3' dataset analyzed using Cell Ranger 3.0.0

Number of samples on this datasets page1

Cells from the whole heart of an E18 mouse (the same cells were used to generate heart_1k_v3, heart_10k_v3).

  • 712 cells detected
  • Sequenced on Illumina NovaSeq with approximately 124,000 reads per cell
  • 28bp read1 (16bp Chromium barcode and 12bp UMI), 91bp read2 (transcript), and 8bp I7 sample barcode
  • run with --expect-cells=1000

This dataset is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. 10x citation guidelines available here.

Product

Universal 3'

Software

Cell Ranger

Subpipeline

cellranger count

10x Instrument(s)

Chromium Controller

Species

Mouse

Anatomical Entity

Heart

Cells or Nuclei

Cells

Biomaterial Type

Specimen from Organism

Cell/Nuclei Count

712

Donor Count

1

Date Published

2018-11-19