All datasets

10k Cells from a MALT Tumor - Gene Expression with a Panel of TotalSeq™-B Antibodies

Single Cell Gene Expression dataset analyzed using Cell Ranger 3.0.0

Assess data quality
View summary metrics to assess data quality and more.
View summary
Visualize and explore data
Discover differentially expressed genes, visualize your favorite genes, and explore your data with our visualization software.

Learn about Chromium analysis

Cells from a dissociated Extranodal Marginal Zone B-Cell Tumor (MALT: Mucosa-Associated Lymphoid Tissue) stained with a panel of TotalSeq™-B antibodies.

  • 8,412 cells detected
  • Sequenced on Illumina NovaSeq with approximately 32,000 reads per cell
  • 28bp read1 (16bp Chromium barcode and 12bp UMI), 91bp read2 (transcript), and 8bp I7 sample barcode
  • run with --expect-cells=10000
  • This dataset was generated using a pre-release set of TotalSeq-B antibodies. The barcode sequences have since changed. Please refer to https://www.biolegend.com/totalseq for the latest conjugated barcode information.

To maintain donor anonymity, sequence data for this sample is not currently available.

This dataset is licensed under the Creative Commons Attribution license.