5k Peripheral Blood Mononuclear Cells (PBMCs) from a Healthy Donor

Epi ATAC dataset analyzed using Cell Ranger ATAC 1.0.1

View summary metrics to assess data quality and more.

Number of samples on this datasets page1

Peripheral blood mononuclear cells (PBMCs) from a healthy donor.

~6700 transposed nuclei were loaded.
5335 nuclei were recovered.
Sequenced on Illumina NovaSeq with approximately 42k read pairs per cell:
- 50 bp Read 1
- 8 bp i7 index (sample index)
- 16 bp i5 (10x Barcode)
- 49 bp Read 2

This dataset is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. 10x citation guidelines available here.

Product

Epi ATAC

Software

Cell Ranger ATAC

Subpipeline

cellranger-atac count

10x Instrument(s)

Chromium Controller

Species

Human

Anatomical Entity

Blood

Disease State

healthy

Cells or Nuclei

Nuclei

Selected Cell Types

PBMCs

Biomaterial Type

Cell Suspension

Cell/Nuclei Count

5,335

Donor Count

Date Published

2018-12-17