PBMCs from Heparin-Treated Blood Collection Tubes Isolated via SepMate-Ficoll Gradient (5' v2 Chemistry)
Single Cell Immune Profiling dataset analyzed using Cell Ranger 6.1.0
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Dataset overview
Output and supplemental files
Input files
Learn about Chromium analysis
Donor Information: Healthy female
Isolation protocol: CG000392.RevA: Isolation of Leukocytes, Bone Marrow and Peripheral Blood Mononuclear Cells for Single Cell RNA Sequencing.
Whole transcriptome/Gene Expression libraries were generated as described in the Chromium Next GEM Single Cell 5' Reagent Kits v2 (Dual Index) User Guide (CG000331 Rev A).
Sequencing data were processed using Cell Ranger, with web_summary.html and output files available below.
- Sequencing instrument: Illumina NovaSeq 6000
- Sequencing depth: 28,722
- Sequencing configuration: Paired-end (28 X 90), single-indexed. Read 1: 28 cycles (16 bp barcode, 10 bp UMI); i7 index: 10 cycles; i5 index: 10 cycles; Read 2: 90 cycles (transcript).
- Cells detected: 3,791
- Median genes per cell: 1,580
- Median UMIs per cell: 4,465
This dataset is licensed under the Creative Commons Attribution license.