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Single Cell ATAC

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What is Single Cell ATAC?

Chromium Single Cell ATAC (Assay for Transposase Accessible Chromatin) analyzes thousands of unique open chromatin fragments genome-wide with single cell resolution.

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Documentation

We provide resources from protocols, user guides, and free-to-use analysis tools.

Experimental Design & Planning

Plan ahead by referring to the list of equipment, kits, and reagents needed for Single Cell ATAC.

Sample Prep

Prepare optimal single cell/nuclei suspension by following our Demonstrated Protocols.

Instruments

Refer to instrument-specific documents for seamless instrument operation.

Library Construction

Construct a sequencing-ready single cell library by following our step-by-step User Guide / Protocol.

Sequencing

Sequence your single cell library as per our provided recommendations.

Software Analysis

Analyze your single cell data using our pipelines, visualization, and Cloud Analysis tools.

Datasets

Access free, publicly available data from a number of different sample types generated with Chromium single cell solutions.

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Datasets

Videos

Explore how-to videos and training modules.

Chromium Next GEM Single Cell ATAC v2 video
How-to series
Chromium Next GEM Single Cell ATAC v2
Chromium Next GEM Single Cell ATAC v1.1 video
Training Module
Chromium Next GEM Single Cell ATAC v1.1
Chromium Next GEM Single Cell ATAC video
Training Module
Chromium Next GEM Single Cell ATAC
Q&A

Find answers to common technical questions, from sample prep through data analysis, about Chromium single cell workflows.

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Q&A