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Supported Pipelines and Products

Supported Pipelines and Products

Analysis PipelinesPipeline VersionLibrary Types
Space Ranger count

Visit the Space Ranger count documentation to learn more.
  • 3.1
  • 3.0
  • Visium HD Spatial Gene Expression
Cell Ranger count

Visit the Cell Ranger count documentation to learn more.
  • 9.0
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Universal 3’ Gene Expression
  • Universal 5’ Gene Expression
  • Feature Barcode Libraries
    • Antibody Capture
    • Custom Library
Cell Ranger multi

Visit the following pages to learn more about Cell Ranger multi with sample multiplexing data, Flex data, and V(D)J data.
  • 9.0
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Universal 3’ Gene Expression
  • Universal 5’ Gene Expression
  • Flex Gene Expression
  • Feature Barcode Libraries
    • Antibody Capture
    • CRISPR Guide Capture
    • Custom Library
    • Flex Antibody Capture
    • Flex CRISPR Guide Capture
  • Universal 5' V(D)J
  • Sample multiplexing
    • 3' CellPlex
    • On-chip multiplexing (OCM)
    • Hashing with Antibody Capture
Cell Ranger aggr

Visit the Cell Ranger aggr documentation to learn more.
  • 9.0
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Universal 3’ Gene Expression
  • Universal 5’ Gene Expression
  • Flex Gene Expression
  • Feature Barcode Libraries
    • Antibody Capture
    • CRISPR Guide Capture
    • Custom Library
    • Flex Antibody Capture
    • Flex CRISPR Guide Capture
  • Universal 5' V(D)J
  • Sample multiplexing
    • 3' CellPlex
    • On-chip multiplexing (OCM)
    • Hashing with Antibody Capture
Cell Ranger vdj

Currently, the 10x Cloud Platform does not support Cell Ranger vdj in de novo mode.

Visit the Cell Ranger vdj documentation to learn more.
  • 9.0
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Universal 5' V(D)J
Cell Ranger reanalyze1

Visit the Cell Ranger reanalyze documentation to learn more.
  • 9.0
  • 8.0
  • 7.2
  • 7.1
  • 7.0
  • 6.1
  • 6.0
  • 5.0
  • 4.0
  • 3.1
  • Universal 3' Gene Expression
  • Universal 5' Gene Expression
Cell Ranger annotate (Beta)

Visit the Cell Ranger annotate documentation to learn more.
  • 0.2
  • Universal 3' Gene Expression
  • Universal 5' Gene Expression
  • Flex Gene Expression
Cell Ranger ARC count

Visit the Cell Ranger ARC count documentation to learn more.
  • 2.0
  • Epi Multiome ATAC + Gene Expression
Cell Ranger ARC aggr

Visit the Cell Ranger ARC aggr documentation to learn more.
  • 2.0
  • Epi Multiome ATAC + Gene Expression
Cell Ranger ARC reanalyze1

Visit the Cell Ranger ARC reanalyze documentation to learn
  • 2.0
  • Epi Multiome ATAC + Gene Expression

1At this time, reanalysis of aggregated analyses (Cell Ranger) is not available in Cloud Analysis.