Supported Products

Supported Pipelines and Products

Miscellaneous

10x Genomics Cloud Analysis is a platform for data management, analysis, and collaboration to simplify and accelerate the interpretation of 10x Genomics datasets. Cloud Analysis makes it easier than ever to run 10x analysis pipelines and manage your experimental data. Cloud Analysis is currently available only in the United States and Canada.

Overview

Tutorials

FAQs

Release Notes

Billing

Cloud Analysis

Learn how to create a free account using the two different log-in options.

Account creation

Upload FASTQ files into your projects either using the Web Uploader.

Upload via Web Browser

Upload FASTQ files into your projects either using the 10x Genomics Cloud CLI.

Upload via CLI

In addition to the pre-built human and mouse reference packages available in Cloud Analysis, you can upload and use your own custom references in your Cloud Analysis projects.

Upload a reference

After uploading FASTQ files into your project in Cloud Analysis, you are ready to analyze your data.

Create analyses

You are given four unique options for downloading your output files for each completed analysis. These options have certain benefits and limitations that make them appropriate for different circumstances.

Download output files

Cloud Analysis allows you to transfer projects from your user account to another user account.

Transfer projects

The 10x Genomics Cloud CLI is a command line interface (CLI) that allows you to upload FASTQ files to projects in your 10x Genomics account, create projects from the command line, and manage other tasks related to your 10x Genomics account.

CLI Documentation

10x Genomics Cloud Analysis is a platform for data management, analysis, and collaboration to simplify and accelerate the interpretation of 10x Genomics datasets. Cloud Analysis makes it easier than ever to run 10x analysis pipelines and manage your experimental data.

What is Cloud Analysis?

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Projects are where you upload data and run analysis pipelines. People typically create projects for each experiment. You can upload different samples to a single project.

Create Projects

Upload FASTQ files either directly from your web browser or via the 10x Genomics Cloud CLI

Upload FASTQ files

After uploading, select the FASTQ sets that you want to use as analysis inputs. Then configure your pipeline settings and start the analysis.

Create Analyses

You can optionally receive an email when your analysis completes. When your results are ready, you can download the analysis outputs and explore your data using Loupe Browser or a variety of community analysis tools.

Download Results

10x Genomics pre-built human, mouse, and barnyard references are available for all users. You may optionally upload your own custom references to use in the analyses on your account

Optional workflow steps

We provide resources from protocols, user guides, and free-to-use analysis tools.

Find answers to frequently asked questions, including information about browser and operating system support.

We regularly add new features to 10x Genomics Cloud. Find details about the updates and improvements on this page.

Analysis Pipelines	Pipeline Version	Library Types
Cell Ranger count Visit the Cell Ranger count documentation to learn more.	7.1 7.0 6.1 6.0 5.0 4.0 3.1	Single Cell 3’ Gene Expression Single Cell 5’ Gene Expression Feature Barcode Libraries Antibody Capture Antibody Capture Custom Library
Cell Ranger multi Visit the following pages to learn more about Cell Ranger multi with Multiplexing Capture data, Fixed RNA profiling data, and Immune Profiling data.	7.1 7.0 6.1 6.0 5.0 4.0 3.1	Single Cell 3’ Gene Expression Single Cell 5’ Gene Expression Single Cell Fixed RNA Profiling Feature Barcode Libraries Antibody Capture CRISPR Guide Capture Custom Library Single Cell V(D)J Multiplexing Capture (3' only)
Cell Ranger aggr Visit the Cell Ranger aggr documentation to learn more.	7.1 7.0 6.1 6.0 5.0 4.0 3.1	Single Cell 3’ Gene Expression Single Cell 5’ Gene Expression Single Cell Fixed RNA Profiling Feature Barcode Libraries Antibody Capture CRISPR Guide Capture Custom Library Single Cell V(D)J Multiplexing Capture (3' only)
Cell Ranger vdj Visit the Cell Ranger vdj documentation to learn more.	7.1 7.0 6.1 6.0 5.0 4.0 3.1	Single Cell V(D)J
Cell Ranger reanalyze¹ Visit the Cell Ranger reanalyze documentation to learn more.	7.1 7.0 6.1 6.0 5.0 4.0 3.1	Single Cell 3' Gene Expression Single Cell 5' Gene Expression
Cell Ranger ARC count Visit the Cell Ranger ARC count documentation to learn more.	2.0	Single Cell Multiome ATAC + Gene Expression
Cell Ranger ARC aggr Visit the Cell Ranger ARC aggr documentation to learn more.	2.0	Single Cell Multiome ATAC + Gene Expression
Cell Ranger ARC reanalyze¹ Visit the Cell Ranger ARC reanalyze documentation to learn	2.0	Single Cell Multiome ATAC + Gene Expression