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Single Cell CNV
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Seminars
Envision New Dimensions: Getting Started with the Visium Spatial Gene Expression Solution
Aigu Lin
Regional Marketing Manager, South APAC, 10x Genomics
November 20, 2019
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Spanish Webinar - Biology at True Resolution
Luca Mazzitelli
Pernille Albertus
Roser Vento-Tormo
10x Genomics
July 16, 2019
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Single-Cell Genomics in Cancer Immunotherapy
Ansu Satpathy, MD, PhD
Stanford University School of Medicine
October 16, 2019
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Resolving Molecular Heterogeneity Through Spatial Transcriptomics
David Craig, PhD
USC Institute of Translational Genomics
October 16, 2019
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CHISELing out allele- and haplotype-specific copy numbers in single cells
Ben Raphael, PhD
Professor of Computer Science, Princeton University
October 15, 2019
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Introducing the Visium Spatial Gene Expression Solution
Nikhil Rao, PhD
Zachary Bent, PhD
10x Genomics
September 18, 2019
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Visualizing and Exploring Single Cell Gene Expression Data
Juan Du, PhD
Software Field Operations Engineer, 10x Genomics
August 30, 2019
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Sample Preparation for Single Cell Analysis: Tips and Tricks (APAC session)
Jill Herschleb, PhD
Director, Sample Preparation, 10x Genomics
August 29, 2019
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Sample Preparation for Single Cell Analysis: Tips and Tricks
Jill Herschleb, PhD
Director, Sample Preparation, 10x Genomics
August 14, 2019
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Uncover True Genomic Heterogeneity: Getting Started with Single Cell DNA sequencing
Karthik Ganapathy
Product Manager, Single Cell Genomics, 10x Genomics
July 30, 2019
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Integration of Multiple Types of Single-Cell Data With Seurat v3
Rahul Satija, PhD
Core Faculty Member, New York Genome Center & Assistant Professor, NYU Center for Genomics and Systems Biology
July 17, 2019
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A Guide to Successfully Run your Single Cell Immune Profiling Experiment with 10x Genomics
Giovanna Prout
Senior Director, Product Marketing 10x Genomics
June 27, 2019
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Uncover True Genomic Heterogeneity: Getting Started with Single Cell Genomes
Kamila Belhocine
10x Genomics
June 13, 2019
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Getting Started with Single Cell ATAC Sequencing for High Resolution Epigenomic Studies
Laura DeMare, Ph.D.
Associate Product Manager, Epigenomics, 10x Genomics
April 23, 2019
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Explore Gene Expression in the Context of the Tissue Microenvironment
Tarjei Mikkelsen
March 25, 2019
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Toward a More Complete Understanding of the Immune System
Mike Stubbington
March 21, 2019
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Dissecting Complex Systems with Multidimensional Data
Sarah Garcia
10x Genomics, Inc.
March 21, 2019
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Getting Started with Single Cell Gene Expression: A Guide to Successfully Run your Single Cell Gene Expression Experiment with 10x Genomics
Jens Durruthy, Ph.D.
Product Manager, Single Cell 10x Genomics
March 05, 2019
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Generating high-quality genome drafts from uncultured microbiome samples with a single shotgun experiment
Ami Bhatt, MD, PhD
Stanford University
February 13, 2019
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Discover how single-cell RNA sequencing provides deeper insights into lung cancer biology
Bernard Thienpont
Annika Branting
Pawel Zajac
KU Leuven | 10x Genomics | Illumina
November 28, 2018
LabRoots Webinar
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Single-Cell Reconstruction of the Human Early Maternal-Fetal Interface
Annika Branting
Roser Vento-Tormo
Mirjana Efremova
10x Genomics | Wellcome Sanger Institute
November 06, 2018
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Biology at True Resolution – Enabling a Comprehensive View of Genomics
Giovanna Prout
10x Genomics
October 17, 2018
ASHG 2018
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Constructing the Human Immune Census
Jimmie Ye
University of California San Francisco
October 17, 2018
ASHG 2018
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A Multiplexed Association Framework Applied to Tie Enhancers to their Target Genes via Cellular Genetic Screens
Molly Gasperini
University of Washington
October 17, 2018
ASHG 2018
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Personal Regulome Navigation using Single Cell ATAC-Seq
Anjana Narayanan
Howard Chang
Grace Zheng
10x Genomics & Stanford Univ.
October 03, 2018
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Single Cell Mouse Immune Profiling
Giovanna Prout
Josephine Lee
10x Genomics
July 26, 2018
Single Cell Summer Webinar Series
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Interrogating Chromatin Accessibility and Regulatory Landscape at Single-Cell Resolution
Anjana Narayanan
Grace Zheng
10x Genomics
July 19, 2018
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Single Cell CNV
Anushka Brownley
Shamoni Maheshwari
10x Genomics
July 12, 2018
Single Cell Summer Webinar Series
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Highly Multiplexed Transcriptome and Protein Immune Profiling in Single Cells with CITE-seq
Peter Smibert, Ph.D.
Manager, Technology Innovation
May 23, 2018
New York Genome Center
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Tumor Heterogeneity in Cancer Genome Science and Precision Oncology
John Carpten
USC
May 21, 2018
AACR
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Single Cell RNA Sequencing Unveils Mechanisms of Response and Resistance to Immunotherapy
Aude Chapuis
Fred Hutchinson Cancer Research Center
May 21, 2018
AACR
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Revealing the True Biology of Cancer
Anushka Brownley
10x Genomics
May 21, 2018
AACR
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Methods for Sample Preparation and Single Cell Analysis of Solid Tumors
JIll Herschleb
10x Genomics
May 21, 2018
AACR
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Single Cell RNA Sequencing Unveils Mechanisms of Response and Resistance to T-Cell Immunotherapy
Aude Chapuis
Fred Hutchinson Cancer Research Center
February 13, 2018
AGBT
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Automation Compatible Linked-Read Analysis of Dried Blood Spots
Madhuri Hegde, Ph.D.
PerkinElmer
December 07, 2017
ASHG 2017 Orlando, FL
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Interrogating the human adaptive immune response with high-throughput precision immunology
James Crowe
Vanderbilt Vaccine Center
November 21, 2017
Nature Webinar
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Population scale genome study of the Faroese population using Linked-Reads
Noomi Oddmarsdóttir Gregersen
FarGen Project
November 01, 2017
Nature Webinar
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Harnessing the therapeutic potential of adoptively transferred cells
Aude Chapuis
Fred Hutchinson Cancer Research Center
June 22, 2017
Nature Webcast
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Perturb-seq: High Throughput CRISPR Screening via Single-Cell RNA Sequencing
Dr. Jonathan Weissman
University of California, San Francisco and Howard Hughes Medical Institute
May 10, 2017
Nature Webinar
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Perturb-seq: Single-cell CRISPRi screens interrogate the Unfolded Protein Response
Britt Adamson
University of California, San Francisco
March 21, 2017
User Group Meeting - San Francisco, CA
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Genome assembly of the mind-controlling fly pathogen
E. muscae
via 10x Genomics
Carolyn Elya
University of California, Berkeley
March 21, 2017
User Group Meeting - San Francisco, CA
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Genome-wide reconstruction of complex structural variants
Noah Spies
Stanford University
March 21, 2017
User Group Meeting - San Francisco, CA
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de novo
assembly of a large size genome: the olive fruit fly
Jiannis Ragoussis
McGill University
February 14, 2017
AGBT Annual Meeting - Hollywood, FL
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Addressing difficult biology: 10x and OneSeq phased exome
David Craig
Translational Genomics Research Institute
February 13, 2017
AGBT Annual Meeting - Hollywood, FL
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Universal approach for noninvasive prenatal testing of single gene diseases
Winnie Hui
The Chinese University of Hong Kong
February 13, 2017
AGBT Annual Meeting - Hollywood, FL
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Deciphering complex structural variation using Linked-Reads
Jill Herschleb
10x Genomics, Inc.
January 14, 2017
Plant & Animal Genome - San Diego, CA
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Linked-Reads for improved genomics
Sarah Garcia
10x Genomics, Inc.
November 11, 2016
AMP Annual Meeting - Charlotte, NC
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Quantitative profiling of large and complex single cell populations
Grace Zheng
10x Genomics, Inc.
October 22, 2016
ASHG Annual Meeting - Vancouver, BC
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Chromium single cell solutions
Tarjei Mikkelsen
10x Genomics, Inc.
October 21, 2016
ASHG Annual Meeting - Vancouver, BC
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Exploring 50 whole genomes with Chromium Linked-Reads
Chris Whelan
Broad Institute
October 21, 2016
ASHG Annual Meeting - Vancouver, BC
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Resolving short reads and distinguishing variants in PMS2
Charlly Kao
Children's Hospital of Philadelphia
October 21, 2016
ASHG Annual Meeting - Vancouver, BC
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Defining the immune system at single cell resolution with Seurat
Rahul Satija
NYU Center for Genomics and Systems Biology
October 05, 2016
Nature Webcast
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Massively-parallel single cell analysis with the Chromium System
Tarjei Mikkelsen
10x Genomics, Inc.
September 21, 2016
Pleasanton, CA
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Everyday
de novo
assembly with the Supernova Assembler
David Jaffe
10x Genomics, Inc.
September 10, 2016
Pleasanton, CA
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Improving genome analysis with Linked-Reads
Deanna Church
10x Genomics, Inc.
August 15, 2016
Pleasanton, CA
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Resolving the “dark matter” of the exome
Hakon Hakonarson
Children’s Hospital of Philadelphia
June 03, 2016
Nature Webcast
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Analyzing immune cell communities on a massive scale with single-cell RNA-Seq
Cole Trapnell
University of Washington
April 22, 2016
Nature Webcast
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Poster Videos
Analyzing Infiltrating B cell Populations in the Tumor Microenvironment Using Single Cell Transcriptomics
Sarah Taylor
10x Genomics
May 21, 2018
AACR
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Single-Cell RNA Sequencing Identifies Macrophage-Specific Expression Signatures Associated with Phagocytosis of Multiple Myeloma after Treatment with cIAP Antagonist
Nick Banovich
TGEN
May 21, 2018
AACR
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Single Cell RNA Sequencing of multiple myeloma clinical patients for identifying novel immuno-oncology drug targets
Namit Kumar
Merck
May 21, 2018
AACR
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A Scalable Microfluidic Platform for Determining Cellular Heterogeneity by Copy Number Detection
Andrew Price
10x Genomics
May 21, 2018
AACR
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Leveraging new methods in single-cell copy number analysis and clonotype detection to uncover and characterize hidden sub-clones within standard cell-lines
Enrique I. Velazquez Villarreal
USC
May 21, 2018
AACR
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Copy number profiling of thousands of single cells in parallel
Kamila Belhocine
Vijay Kumar
10x Genomics
March 06, 2018
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How-to Videos
Single Cell Gene Expression - Chapter 7 - Transfer GEMs
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Single Cell Gene Expression - Chapter 8 - Break GEMs with Recovery Agent
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Single Cell Gene Expression - Chapter 9 - Post GEM-RT Cleanup - Dynabeads
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Single Cell Gene Expression - Chapter 10 - cDNA Amplification
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Single Cell Gene Expression - Chapter 11 - cDNA Cleanup - SPRI Select
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Single Cell ATAC - Chapter 1 - Getting Started
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Single Cell ATAC - Chapter 2 - Prepare Transposition Mix and Isothermal Incubation
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Single Cell ATAC - Chapter 3 - Prepare Barcoding Master Mix and Assemble the Chip
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Single Cell ATAC - Chapter 4 - Load Chromium Next GEM Chip H
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Single Cell ATAC - Chapter 5 - Run the Chromium Controller
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Single Cell ATAC - Chapter 6 - Transfer GEMs
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Single Cell ATAC - Chapter 7 - Break GEMs with Recovery Agent
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Single Cell CNV - Chapter 1 - Getting Started
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Single Cell CNV - Chapter 2 - Cell Bead Generation: Assembling Chromium Chip C
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Single Cell CNV - Chapter 3 - Cell Bead Generation: Combining Cell Matrix, Reagents and Cells
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Single Cell CNV - Chapter 4 - Cell Bead Generation: Loading Reagents Into Chip C
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Single Cell CNV - Chapter 5 - Cell Bead Generation: Transfer Cell Beads
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Single Cell CNV - Chapter 6 - Cell Bead Processing: Solvent Exchange
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Single Cell CNV - Chapter 7 - Cell Bead Processing: Lysis
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Single Cell CNV - Chapter 8 - Cell Bead Processing: Filtration
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Single Cell CNV - Chapter 9 - GEM Generation & Barcoding: Prepare Reaction Mix
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Single Cell CNV - Chapter 10 - GEM Generation and Barcoding: Load Chromium Chip D
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Single Cell CNV - Chapter 11 - GEM Generation and Barcoding: Transfer GEMs and GEM Isothermal Incubation
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Single Cell CNV - Chapter 12 - Post GEM Incubation Cleanup and QC: Breaking the GEMs with Recovery Agent
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Genome Sequencing - Chapter 1 - Getting Started
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Genome Sequencing - Chapter 2 - Preparing Sample Master Mix
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Genome Sequencing - Chapter 3 - Denaturing DNA
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Genome Sequencing - Chapter 4 - Assembling the Chip
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Genome Sequencing - Chapter 5 - Loading Reagents into the Chip
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Genome Sequencing - Chapter 6 - Running the Chromium Controller
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Genome Sequencing - Chapter 7 - Transferring GEMs
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Genome Sequencing - Chapter 8 - Breaking GEMs with Recovery Agent
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Single Cell Immune Profiling - Chapter 1 - Getting Started
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Single Cell Immune Profiling - Chapter 2 - Prepare Reaction Mix
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Single Cell Immune Profiling - Chapter 3 - Assemble Chromium Next GEM Chip G
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Single Cell Immune Profiling - Chapter 4 - Combining Master Mix, Water, and Cells
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Single Cell Immune Profiling - Chapter 5 - Loading Chromium Next GEM Chip G
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Single Cell Immune Profiling - Chapter 6 - Run the Chromium Controller
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Single Cell Immune Profiling - Chapter 9 - Post GEM-RT Cleanup - Dynabeads
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Single Cell Immune Profiling - Chapter 8 - Breaking GEMs with Recovery Agent
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Single Cell Immune Profiling - Chapter 7 - Transferring GEMs
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Single Cell Immune Profiling - Chapter 10 - cDNA Amplification
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Single Cell Immune Profiling - Chapter 11 - cDNA Cleanup - SPRI Select
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Single Cell Gene Expression - Chapter 1 - Getting Started
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Single Cell Gene Expression - Chapter 2 - Prepare Master Mix
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Single Cell Gene Expression - Chapter 3 - Assemble Chromium Next GEM Chip G
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Single Cell Gene Expression - Chapter 4 - Combining Master Mix, Water, and Cells
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Single Cell Gene Expression - Chapter 5 - Loading Chromium Next GEM Chip G
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Single Cell Gene Expression - Chapter 6 - Run the Chromium Controller
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Software Demos
Single Cell Gene Expression - Chapter 1 - Downloading Software and Datasets
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Single Cell Gene Expression - Chapter 2 - Basic Orientation
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Single Cell Gene Expression - Chapter 3 - Toolbar
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Single Cell Gene Expression - Chapter 4 - Clustering Cells in Categories Mode
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Single Cell Gene Expression - Chapter 5 - Creating Custom Categories
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Single Cell Gene Expression - Chapter 6 - Clustering Cells in Gene Expression Mode
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Single Cell Gene Expression - Chapter 7 - Importing Gene Lists
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Single Cell Gene Expression - Chapter 8 - Split View Tool
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Single Cell Gene Expression - Chapter 9 - Significant Genes Tool
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Single Cell Immune Profiling - Chapter 1 - Basic Orientation
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Single Cell Immune Profiling - Chapter 2 - Toolbar
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Single Cell Immune Profiling - Chapter 3 - Clustering Cells in Categories Mode
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Single Cell Immune Profiling - Chapter 4 - Creating Custom Categories
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Single Cell Immune Profiling - Chapter 5 - Clustering Cells in Gene Expression Mode
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Single Cell Immune Profiling - Chapter 6 - Importing Gene Lists
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Single Cell Immune Profiling - Chapter 7 - Split View Tool
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Single Cell Immune Profiling - Chapter 8 - Significant Genes Tool
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Single Cell Immune Profiling - Chapter 9 - Importing V(D)J Clonotypes
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Single Cell Immune Profiling - Chapter 10 - Associating V(D)J Clonotypes with Phenotypes
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Single Cell Immune Profiling - Chapter 11 - Creating Clusters from Clonotypes
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Training Modules
Single Cell Gene Expression - Chapter 1 - Single Cell Digital Gene Expression
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Single Cell Gene Expression - Chapter 2 - GemCode Technology and the Single Cell 3' Solution
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Single Cell Gene Expression - Chapter 3 - Biochemistry Behind the Single Cell Assay
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Single Cell Gene Expression - Chapter 4 - Sample Preparation
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Single Cell Gene Expression - Chapter 5 - GEM Generation and Barcoding
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Single Cell Gene Expression - Chapter 6 - Post-GEM RT Cleanup and cDNA Amplification
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Single Cell Gene Expression - Chapter 7 - Library Construction and Sequencing Libraries
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Single Cell Gene Expression - Chapter 8 - Cell Ranger: Overview
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Single Cell Gene Expression - Chapter 9 - Cell Ranger: Transcript Counting and the Gene/Cell Matrix
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Single Cell Gene Expression - Chapter 10 - Cell Ranger: QC Metrics and Secondary Analysis
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Genome Sequencing - Chapter 1 - Genome Analysis with Linked-Reads
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Genome Sequencing - Chapter 2 - GemCode Technology and Linked-Reads
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Genome Sequencing - Chapter 3 - Biochemistry Behind the Genome Assay
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Genome Sequencing - Chapter 4 - Generating Linked-Reads
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Genome Sequencing - Chapter 5 - Sample Preparation
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Genome Sequencing - Chapter 6 - GEM Generation and Barcoding
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Genome Sequencing - Chapter 7 - Post-GEM Incubation Cleanup and QC
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Genome Sequencing - Chapter 8 - Library Construction and Sequencing Libraries
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Genome Sequencing - Chapter 9 - Long Ranger: Overview
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Genome Sequencing - Chapter 10 - Long Ranger WGS
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Genome Sequencing - Chapter 11 - Long Ranger: Output Files and Reference Support
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Genome Sequencing - Chapter 12 - Loupe Genome Browser
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Single Cell Immune Profiling - Chapter 1 - Single Cell 5' Gene Expression and V(D)J Profiling
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Single Cell Immune Profiling - Chapter 2 - 10x Technology and the Single Cell V(D)J Solution
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Single Cell Immune Profiling - Chapter 3 - Biochemistry Behind the Single Cell V(D)J Assay
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Single Cell Immune Profiling - Chapter 4 - Sample Preparation
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Single Cell Immune Profiling - Chapter 5 - GEM Generation, Barcoding and Cleanup
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Single Cell Immune Profiling - Chapter 6 - 5' Gene Expression cDNA Amplification and Library Prep
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Single Cell Immune Profiling - Chapter 7 - Target Enrichment and V(D)J Library Prep
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Single Cell Immune Profiling - Chapter 8 - Sequencing 5' Gene Expression and V(D)J Libraries
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10x-pert Workshops
10x-pert Workshop: A New Way of Exploring Immunity
Presenters:
10x-perts:
Mike Stubbington
Alvaro Martinez Barrio
Dagmar Walter
July 10, 2019
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10x-pert Workshop: Towards High Resolution Epigenomics – Analyzing and Visualizing Single Cell ATAC-seq Data
Presenters:
10x-perts:
Michael Campbell
Hank Tu
Zuly Peralta
June 20, 2019
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10x-pert Workshop: Redefining Immune Cell Phenotyping & Characterization
Presenters:
10x-perts:
Sarah Taylor
Daniel Riorden
Dagmar Walter
May 29, 2019 | 9am PT and May 30, 2019| 10am SGT
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10x-pert Webinar: Nuclei Isolation for Single Cell ATAC Sequencing
Presenters:
10x-perts:
Francesca Meschi
Corey Nemec
Alaina Puleo
Jean Wang
March 13, 2019 | 9am PT and March 14, 2019 | 10am SGT
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10x-pert Workshop: Tumor Dissociation for Single Cell RNA-seq
Presenters:
10x-perts:
Jill Herschleb
Sharmila Chatterjee
June 05, 2018
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10x-pert Workshop: Characterization of the Tumor Microenvironment with the Chromium Single Cell Immune Profiling Solution
Presenters:
10x-perts:
Stephane Boutet
Sarah Taylor
March 20, 2018
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10x-pert Workshop:
de novo
Assembly with Linked-Reads and Supernova 2.0
Presenters:
10x-perts:
Nikka Keivanfar
David Jaffe
January 30, 2018
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10x-pert Workshop: How-to: Single-Nuclei RNA-seq
Presenters:
10x-perts:
Sharmila Chatterjee
Paul Ryvkin
November 28, 2017
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10x-pert Workshop: Single cell immune repertoire profiling- T cell V(D)J typing
Presenters:
10x-perts:
Kevin Wu
Patrick Marks
September 21, 2017
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10x-pert Workshop: Single cell RNA-seq data analysis and visualization
Presenters:
10x-perts:
Paul Ryvkin
Jeff Mellen
September 15, 2017
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10x-pert Workshop: Structural variant and haplotype analysis with Linked-Read data
Presenters:
10x-perts:
Sarah Garcia
David Stafford
September 05, 2017
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10x-pert Workshop: HMW DNA sample preparation techniques and best practices
Presenter:
10x-pert:
Jill Herschleb
August 31, 2017
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10x-pert Workshop: Single cell sample preparation techniques and best practices
Presenters:
10x-perts:
Jessica Terry
Jill Herschleb
August 29, 2017
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