Products
Resources
Support
Company
View pricing
Search
Open Menu
Support home
Cell Ranger 7.2
Analysis
Feature-Barcode Matrices from Cell Ranger Pipelines
Cell Ranger 7.2
Overview
Getting Started
Download Center
Cell Ranger Commands
Analysis
Inputs
Overview
Custom Reference with mkref
Custom V(D)J Reference
FASTQs
Generating FASTQs (mkfastq)
Specifying FASTQs
FASTQs with Illumina software
Running Pipelines
Choosing a pipeline
Library types
GEX (count)
Antibody/CRISPR (count)
3' Cell Multiplexing (multi)
VDJ-T/B only (vdj)
VDJ + GEX + FB/BEAM (multi)
Fixed RNA Profiling (multi)
Secondary Analysis
Aggregate Multiple Samples (aggr)
Custom Analysis (reanalyze)
Outputs
Overview
Web Summary
Metrics
Feature-Barcode Matrices
BAM
Molecule Info (H5)
Secondary Analysis
Results of aggr
Library types
Gene Expression
Antibody Capture
CRISPR Guide Capture
Cell Multiplexing
VDJ-T/B
VDJ + GEX + BEAM
Fixed RNA Profiling
Tutorials
Inputs
Overview
Custom Reference with mkref
Custom V(D)J Reference
FASTQs
Generating FASTQs (mkfastq)
Specifying FASTQs
FASTQs with Illumina software
Running Pipelines
Choosing a pipeline
Library types
GEX (count)
Antibody/CRISPR (count)
3' Cell Multiplexing (multi)
VDJ-T/B only (vdj)
VDJ + GEX + FB/BEAM (multi)
Fixed RNA Profiling (multi)
Secondary Analysis
Aggregate Multiple Samples (aggr)
Custom Analysis (reanalyze)
Outputs
Overview
Web Summary
Metrics
Feature-Barcode Matrices
BAM
Molecule Info (H5)
Secondary Analysis
Results of aggr
Library types
Gene Expression
Antibody Capture
CRISPR Guide Capture
Cell Multiplexing
VDJ-T/B
VDJ + GEX + BEAM
Fixed RNA Profiling
Algorithms
Advanced
Troubleshooting
Miscellaneous
Release Notes
Q&A
Glossary
Datasets
Loupe Browser
Version
v7.2
Click here for older versions
Feature-Barcode Matrices from Cell Ranger Pipelines
Formats
MEX Format
HDF5 Format
On This Page
Formats