Chromium Single Cell

The most versatile single cell toolkit

Choose from powerful chemistries

Flex

Fix, batch, and run on your schedule.

  • Protein coding gene coverage: Performs well with low-quality and FFPE samples

  • Multiomic readouts from the same cell: Gene expression, Protein, CRISPR

  • Throughput options: Up to 8M cells (1–3,072 samples) per run

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Flex overviewFlex Apex

Universal 3'

Species agnostic. Maximum versatility.

  • Whole transcriptome coverage: 3' gene expression across human, mouse, plant, insect, and more

  • Multiomic readouts from the same cell: 3' gene expression, Cell surface protein

  • Throughput options: Up to 160,000 cells (1–8 samples) per run

Universal 5'

Analyze immune diversity.

  • Whole transcriptome coverage: 5' gene expression with paired, full-length TCR/BCR sequences

  • Multiomic readouts from the same cell: 5' gene expression, TCR/BCR, Antigen specificity, Protein, CRISPR

  • Throughput options: Up to 160,000 cells (1–8 samples) per run

Epi Multiome

Link gene regulation to expression.

  • ATAC + gene expression: Directly link 3' gene expression and epigenomic profiles from the same nucleus

  • Gene regulation insights: Resolve cell types and states with genome-wide epigenetic profiles

  • Throughput options: Up to 160,000 nuclei (1–8 samples) per run

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Epi Multiome

Epi ATAC

Unmask epigenomic profiles.

  • ATAC-seq chemistry: Explore open chromatin regions at single cell resolution

  • Genome-wide profiles: Thousands of unique open chromatin fragments per cell

  • Throughput options: Up to 80,000 nuclei (1–8 samples) per run

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Epi ATAC

Single Cell Protein

Flex add-on. Protein and RNA from the same cell.

  • Discovery-scale panel: 347 DNA-barcoded antibodies profiling up to 326 protein targets

  • Multiomic readouts from the same cell: Cell surface and intracellular protein plus gene expression

  • Seamless workflow: Runs as part of your existing Flex experiment, in the same run

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